gisticCompare: compare two GISTIC objects

In PoisonAlien/maftools: Summarize, Analyze and Visualize MAF Files

compare two GISTIC objects

Description

compare two GISTIC objects

Usage

gisticCompare(
  g1,
  g2,
  g1Name = NULL,
  g2Name = NULL,
  minEvent = 5,
  pseudoCount = FALSE
)

Arguments

g1	first GISTIC object
g2	second GISTIC object
g1Name	optional name for first cohort
g2Name	optional name for second cohort
minEvent	Consider only cytobands with minimum this number of samples altered in at least one of the cohort for analysis. Helpful to ignore single mutated genes. Default 5.
pseudoCount	If TRUE, adds 1 to the contingency table with 0's to avoid 'Inf' values in the estimated odds-ratio.

Details

Performs fisher test on 2x2 contingency table generated from two GISTIC objects

Value

result list

See Also

forestPlot

lollipopPlot2

PoisonAlien/maftools documentation built on Nov. 10, 2024, 6:01 p.m.