mafSummary: Summary statistics of MAF
In PoisonAlien/maftools: Summarize, Analyze and Visualize MAF Files
View source: R/mafGeneSummary.R
mafSummary R Documentation
Summary statistics of MAF
Description
Summarizes genes and samples irrespective of the type of alteration. This is different from getSampleSummary and getGeneSummary which returns summaries of only non-synonymous variants.
Usage
mafSummary(maf)
Arguments
maf
an MAF object generated by read.maf
Details
This function takes MAF object as input and returns summary table.
Value
Returns a list of summarized tables
See Also
getGeneSummary getSampleSummary
Examples
laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
mafSummary(maf = laml)
PoisonAlien/maftools documentation built on April 7, 2024, 2:49 a.m.
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View source: R/mafGeneSummary.R
| mafSummary | R Documentation |
Summary statistics of MAF
Description
Summarizes genes and samples irrespective of the type of alteration. This is different from getSampleSummary and getGeneSummary which returns summaries of only non-synonymous variants.
Usage
mafSummary(maf)
Arguments
maf |
an MAF object generated by |
Details
This function takes MAF object as input and returns summary table.
Value
Returns a list of summarized tables
See Also
getGeneSummary getSampleSummary
Examples
laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
mafSummary(maf = laml)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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