mafbarplot: Creates a bar plot

In PoisonAlien/maftools: Summarize, Analyze and Visualize MAF Files

Creates a bar plot

Description

Takes an MAF object and generates a barplot of mutated genes color coded for variant classification

Usage

mafbarplot(
  maf,
  n = 20,
  genes = NULL,
  color = NULL,
  fontSize = 0.7,
  includeCN = FALSE,
  legendfontSize = 0.7,
  borderCol = "#34495e",
  showPct = TRUE
)

Arguments

maf	an MAF object
n	Number of genes to include. Default 20.
genes	Manually provide names of genes. Default NULL.
color	named vector of colors for each Variant_Classification. Default NULL.
fontSize	Default 0.7
includeCN	Include copy number events if available? Default FALSE
legendfontSize	Default 0.7
borderCol	Default "#34495e". Set to 'NA' for no border color.
showPct	Default TRUE. Show percent altered samples.

Examples

laml.maf = system.file("extdata", "tcga_laml.maf.gz", package = "maftools") #MAF file
laml = read.maf(maf = laml.maf)
mafbarplot(maf = laml)

PoisonAlien/maftools documentation built on Nov. 10, 2024, 6:01 p.m.