MA_plot: M-A plot

In ProfessionalFarmer/loonR: Common function in bioinformatics analysis

M-A plot

Description

M-A plot

Usage

MA_plot(
  M,
  A,
  p,
  m.cutoff = 0,
  a.cutoff = 0,
  p.cutoff = 0.05,
  mlab = "Log2 Fold Change",
  alab = "Average Expression",
  restrict.vector = NA,
  label = NA,
  col.pal = c("blue", "gray", "red")
)

Arguments

M	Fold change or log ratio
A	Average exprssion
p	Adjusted P
m.cutoff	Default 0
a.cutoff	Default 0
p.cutoff	Default 0.05
mlab	Default 'Log2 Fold Change'
alab	Default 'Average Expression'
restrict.vector	A TURE/FALSE factor. Only show TRUE point in the vector.
label	Point names which you want to show in plot. If you don't want to show, set NA
col.pal	Default: c("blue", "gray", "red"). A vector with 3 elements. For significantly down, not significant, significantly up

Examples

MA_plot(tissue.exp.df.res$logFC, tissue.exp.df.res$AveExpr, tissue.exp.df.res$adj.P.Val)

ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.