SCT_Harmony_cluster: SCTranform HarmonyIntegration FindCluster
In ProfessionalFarmer/loonR: Common function in bioinformatics analysis
SCT_Harmony_cluster R Documentation
SCTranform HarmonyIntegration FindCluster
Description
SCTranform HarmonyIntegration FindCluster
Usage
SCT_Harmony_cluster(
seurat.obj,
vars.to.regress = NULL,
group.by.vars = "orig.ident",
dims = 1:20,
runSCT = T,
runHarmony = T
)
Arguments
vars.to.regress
colnames to remove covariate
group.by.vars
colnames to remove batch effect
ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.
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| SCT_Harmony_cluster | R Documentation |
SCTranform HarmonyIntegration FindCluster
Description
SCTranform HarmonyIntegration FindCluster
Usage
SCT_Harmony_cluster(
seurat.obj,
vars.to.regress = NULL,
group.by.vars = "orig.ident",
dims = 1:20,
runSCT = T,
runHarmony = T
)
Arguments
vars.to.regress |
colnames to remove covariate |
group.by.vars |
colnames to remove batch effect |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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