forest_plot: Forest plot

In ProfessionalFarmer/loonR: Common function in bioinformatics analysis

Forest plot

Description

Forest plot

Usage

forest_plot(
  tabletext,
  estimate.data,
  appendHeader = NULL,
  specify.summary = NULL,
  clipping = c(0.1, 4),
  graph.pos = "right",
  xlab = "",
  xlog = TRUE,
  xticks = c(0.1, 0.5, seq(1, 4, 1)),
  x.font.size = 1
)

Arguments

tabletext	data.frame. Column names will be used as header.
estimate.data	Estimate, upper CI, lower CI. Corresponded with tabletext
appendHeader	If provide a vector, top header will be added
specify.summary	Specify the row index. Row will be bold character.
clipping	Range to cut. Will use arrow at two cutting points
graph.pos	Column index, or "left" or "right". Column index to put in right section
xlab	xlab
xlog	If in log-format. If TRUE, vectical line in 0, otherwise a vectical line at 0
xticks	Default c(0.1, 0.5, 1, 2, 3, 4)
x.font.size	x-axis label font size.

Examples

data(LIRI)
or.res <- loonR::univariate_or(LIRI[,c(1,3,4)],LIRI$status)

estimate.data = or.res[,c(2,3,4)]
text.data = data.frame(Variate = or.res$Variate, OR = or.res$OR)

loonR::forest_plot(text.data, estimate.data, graph.pos = 2, specify.summary = 1)

ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.