get.TCGA.RNA.FPKM: Get TCGA RNA expression (RPKM) data

In ProfessionalFarmer/loonR: Common function in bioinformatics analysis

Get TCGA RNA expression (RPKM) data

Description

Get TCGA RNA expression (RPKM) data

Usage

get.TCGA.RNA.FPKM(tcga.project = NULL, rawCount = FALSE, log2 = FALSE)

Arguments

tcga.project	See ?RTCGA.miRNASeq::miRNASeq. For example: COAD
log2	If to perform log2 transformation

Examples

This function is similar to get.TCGA.miRNAExpression in Biomarker.R file.
Data source is illumina hiseq Level 3 RSEM normalized expression data. Data from 2015-11-01 snapshot.
The RNAseq gene expression level 3 data contains Reads per Kilobase per Million mapped reads (RPKM)

ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.