getGeneRelatedTranscripts.Gff: Retrieve all transcripts related to target genes from gtf/gff...
In ProfessionalFarmer/loonR: Common function in bioinformatics analysis
View source: R/TranscriptsRelated.R
getGeneRelatedTranscripts.Gff R Documentation
Retrieve all transcripts related to target genes from gtf/gff file
Description
Retrieve all transcripts related to target genes from gtf/gff file
Usage
getGeneRelatedTranscripts.Gff(
gff.Path,
gene.vector = NULL,
max.transcript.length = 1500000
)
Arguments
gff.Path
Annotation file path or gff GRanges object
gene.vector
Target genes
max.transcript.length
Transcript start - end, default 1500000
Value
plyranges object
ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.
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View source: R/TranscriptsRelated.R
| getGeneRelatedTranscripts.Gff | R Documentation |
Retrieve all transcripts related to target genes from gtf/gff file
Description
Retrieve all transcripts related to target genes from gtf/gff file
Usage
getGeneRelatedTranscripts.Gff(
gff.Path,
gene.vector = NULL,
max.transcript.length = 1500000
)
Arguments
gff.Path |
Annotation file path or gff GRanges object |
gene.vector |
Target genes |
max.transcript.length |
Transcript start - end, default 1500000 |
Value
plyranges object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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