getPromoterRegions: Get promoters by GenomicFeatures package. Region needed
In ProfessionalFarmer/loonR: Common function in bioinformatics analysis
getPromoterRegions R Documentation
Get promoters by GenomicFeatures package. Region needed
Description
Get promoters by GenomicFeatures package. Region needed
Usage
getPromoterRegions(
upstream = 2000,
downstream = 500,
ann = "Ensembl",
ref.genome = "hg38",
ens.release = 99,
addChr = TRUE
)
Arguments
upstream
Default 2000
downstream
Default 500
ann
Default Ensembl
ref.genome
Default hg38 (for refGene)
ens.release
Default 99 (for Ensembl)
ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.
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| getPromoterRegions | R Documentation |
Get promoters by GenomicFeatures package. Region needed
Description
Get promoters by GenomicFeatures package. Region needed
Usage
getPromoterRegions(
upstream = 2000,
downstream = 500,
ann = "Ensembl",
ref.genome = "hg38",
ens.release = 99,
addChr = TRUE
)
Arguments
upstream |
Default 2000 |
downstream |
Default 500 |
ann |
Default Ensembl |
ref.genome |
Default hg38 (for refGene) |
ens.release |
Default 99 (for Ensembl) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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