identifySubtypeFromMatrix: A matrix
In ProfessionalFarmer/loonR: Common function in bioinformatics analysis

identifySubtypeFromMatrix

R Documentation

A matrix

Description

A matrix

Usage

identifySubtypeFromMatrix(
  df,
  adjacency.cutoff = 0.5,
  inflation = 2,
  usingRawDf = F,
  clusterPrefix = NULL
)

Arguments

`df`	n*n row and column are samples
`inflation`	Default is 2 for mcl clustering
`usingRawDf`	Default FALSE. If use raw data frame instead of adjacency matrix
`clusterPrefix`

Examples

data(Subtype.matrix)
sub.asso.ana.res <- loonR::subtypeAssociationAnalysis(Subtype.matrix)
cluster.res = loonR::identifySubtypeFromMatrix(sub.asso.ana.res$JaccardAnalysis, adjacency.cutoff = 0.8)
cluster.res

ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.