load.salmon.matrix: Read Salmon output
In ProfessionalFarmer/loonR: Common function in bioinformatics analysis
load.salmon.matrix R Documentation
Read Salmon output
Description
Read Salmon output
Usage
load.salmon.matrix(
dirPath,
isoform = TRUE,
countsFromAbundance = "no",
dir.pattern = ""
)
Arguments
dirPath
Simple set the directory which contains Salmon output folder
isoform
specify data type. isoforma specific or not.
countsFromAbundance
countsFromAbundance = c("no", "scaledTPM", "lengthScaledTPM", "dtuScaledTPM"),
Value
A tximport oject
Examples
Directory tree: dir/sample_quant/quant.sf
ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.
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| load.salmon.matrix | R Documentation |
Read Salmon output
Description
Read Salmon output
Usage
load.salmon.matrix(
dirPath,
isoform = TRUE,
countsFromAbundance = "no",
dir.pattern = ""
)
Arguments
dirPath |
Simple set the directory which contains Salmon output folder |
isoform |
specify data type. isoforma specific or not. |
countsFromAbundance |
countsFromAbundance = c("no", "scaledTPM", "lengthScaledTPM", "dtuScaledTPM"), |
Value
A tximport oject
Examples
Directory tree: dir/sample_quant/quant.sf
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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