loadArrayExpressDataset: Download dataset from ArrayExpress
In ProfessionalFarmer/loonR: Common function in bioinformatics analysis

loadArrayExpressDataset

R Documentation

Download dataset from ArrayExpress

Description

Download dataset from ArrayExpress

Usage

loadArrayExpressDataset(
  accession_id = NULL,
  Processed.data = NULL,
  relationship = NULL,
  Array.design = NULL
)

Arguments

`Processed.data`	processed.1.zip
`relationship`	sdrf.txt
`Array.design`	adf.txt

Examples

# https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6134/
accession_id = "E-MTAB-6134"
Processed.data = "E-MTAB-6134.processed.1.zip"
relationship = "E-MTAB-6134.sdrf.txt"
Array.design = "A-GEOD-13667.adf.txt"

loonR::downloadArrayExpressDataset(accession_id)

ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.