refSeq_Ensembl: Convert RefSeq ID to Ensembl ID by biomaRt
In ProfessionalFarmer/loonR: Common function in bioinformatics analysis
refSeq_Ensembl R Documentation
Convert RefSeq ID to Ensembl ID by biomaRt
Description
RefSeq identifiers differ in format according to the type of record the identifiers are for as shown below:
Usage
refSeq_Ensembl(nm.accessions)
Arguments
nm.accessions
Details
NG_XXXXX: RefSeq accessions for genomic region (nucleotide) records
NM_XXXXX: RefSeq accessions for mRNA records
NC_XXXXX: RefSeq accessions for chromosome records
NP_XXXXX: RefSeq accessions for protein records
XR_XXXXX: RefSeq accessions for model RNAs that are not associated with protein products
XM_XXXXX: RefSeq accessions for model mRNA records
XP_XXXXX: RefSeq accessions for model protein records
Where XXXXX is a sequence of integers.
NCBI https://www.ncbi.nlm.nih.gov/RefSeq/ allows users to query the RefSeq database using RefSeq identifiers.
ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.
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| refSeq_Ensembl | R Documentation |
Convert RefSeq ID to Ensembl ID by biomaRt
Description
RefSeq identifiers differ in format according to the type of record the identifiers are for as shown below:
Usage
refSeq_Ensembl(nm.accessions)
Arguments
nm.accessions |
Details
NG_XXXXX: RefSeq accessions for genomic region (nucleotide) records
NM_XXXXX: RefSeq accessions for mRNA records
NC_XXXXX: RefSeq accessions for chromosome records
NP_XXXXX: RefSeq accessions for protein records
XR_XXXXX: RefSeq accessions for model RNAs that are not associated with protein products
XM_XXXXX: RefSeq accessions for model mRNA records
XP_XXXXX: RefSeq accessions for model protein records
Where XXXXX is a sequence of integers.
NCBI https://www.ncbi.nlm.nih.gov/RefSeq/ allows users to query the RefSeq database using RefSeq identifiers.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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