runImmunedeconv: Run Immunedeconv

In ProfessionalFarmer/loonR: Common function in bioinformatics analysis

Run Immunedeconv

Description

Run Immunedeconv

Usage

runImmunedeconv(
  expression.df,
  method = c("quantiseq", "timer", "cibersort", "cibersort_abs", "mcp_counter", "xcell",
    "epic"),
  indication = ""
)

Arguments

expression.df	gene × sample. TPM-normalized, not log-transformed
method	c("quantiseq", "timer", "cibersort", "cibersort_abs", "mcp_counter", "xcell", "epic")
indication	When use timer, should be one of immunedeconv::timer_available_cancers

ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.