run_RCTD: run_RCTD
In ProfessionalFarmer/loonR: Common function in bioinformatics analysis
run_RCTD R Documentation
run_RCTD
Description
run_RCTD
Usage
run_RCTD(
scRNA = NULL,
spatial = NULL,
rctd_mode = "doublet",
max_multi_types = 10
)
Arguments
rctd_mode
RCTD has three modes, each suited for different spatial technologies: "doublet": Assigns 1-2 cell types per pixel. Best for high-resolution technologies like Slide-seq and MERFISH. "multi": Like doublet mode but can assign more cell types (up to max_multi_types). Best for lower-resolution technologies like 100-micron Visium. "full": No restrictions on number of cell types.
ProfessionalFarmer/loonR documentation built on June 10, 2025, 10:44 a.m.
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| run_RCTD | R Documentation |
run_RCTD
Description
run_RCTD
Usage
run_RCTD(
scRNA = NULL,
spatial = NULL,
rctd_mode = "doublet",
max_multi_types = 10
)
Arguments
rctd_mode |
RCTD has three modes, each suited for different spatial technologies: "doublet": Assigns 1-2 cell types per pixel. Best for high-resolution technologies like Slide-seq and MERFISH. "multi": Like doublet mode but can assign more cell types (up to max_multi_types). Best for lower-resolution technologies like 100-micron Visium. "full": No restrictions on number of cell types. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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