tcgabiolinks.get.junction.coverage: Download junction data by TCGAbiolinks. Pls note, V2 tag and...

In ProfessionalFarmer/loonR: Common function in bioinformatics analysis

Download junction data by TCGAbiolinks. Pls note, V2 tag and Illumina HiSeq platform were selected

Description

Download junction data by TCGAbiolinks. Pls note, V2 tag and Illumina HiSeq platform were selected

Usage

tcgabiolinks.get.junction.coverage(
  project,
  remove.Raw = FALSE,
  dir = "~/rspace/GDCdata",
  tag = "v2",
  platform = "Illumina HiSeq"
)

Arguments

project	E.g. TCGA-LIHC
remove.Raw	If to remove raw data
dir	Raw data directory
tags	V2

Value

list(clinical = clinical, expression = expression.df, group = group) Group is a data.frame including label, short name and sample barcode Clinical is a list

ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.