Man pages for QTCAT/qtcat
Quantitative Trait Cluster Association Test
| alleleFreq | Allele Frequency. |
| alleleFreq-snpMatrix-method | Allele frequency |
| as.matrix-snpMatrix-method | As matrix method for snpMatrix |
| as.snpMatrix | A snpMatrix constructor |
| clarans | K-medoids clustering of SNPs using randomized search |
| cutClust | Cut a qtcatClust object |
| distCor | Correlation based distance between SNPs |
| hetFreq | Heterozygosity Frequency. |
| hetFreq-snpMatrix-method | Heterozygosity |
| identicals | Perfect simiarity clusters of SNP |
| imputeMedoids | Impute missing information at medoid SNPs |
| imputeSnp | Impute missing information at a medoid SNPs from a group of... |
| imputeSnpIter | Impute missing information at a medoid SNPs from a group of... |
| imputeSnpMatrix | Impute allele in formation to SNPs with missing data |
| lmQtc | Fitting a Linear Model to QTCs |
| medoQtc | Find medoids of QTCs |
| naFreq | Missing Data Frequency. |
| naFreq-snpMatrix-method | NA frequency |
| plotQtc | Plot resulting QTCs of the Hierarchical Inference Test |
| plotSelFreq | Plot markers selection frequencies of the Hierarchical... |
| qtcatClust | Hierarchical clustering for big SNP data sets. |
| qtcatGeno | A genotype object constructor |
| qtcatHit | Fitting Hierarchical Inference Testing |
| qtcat-package | Quantitative Trait Cluster Association Test |
| qtcatPheno | A phenotype object constructor |
| qtcatQtc | Summarize results of Hierarchical Inference Test |
| read.snpData | Read SNP tables as a snpMatrix object |
| rename.leafs | Rename dendrogram leafs |
| snpInfo | Extract genomic position and allele information. |
| snpInfo-qtcatHit-method | Get position from qtcatHit object |
| snpInfo-snpMatrix-method | Get position from snpMatrix |
| snpMatrix-class | A S4 class to represent a SNP-matrix |
| sub-snpMatrix-ANY-ANY-missing-method | Subsetting snpMatrix |
