distCor: Correlation based distance between SNPs
In QTCAT/qtcat: Quantitative Trait Cluster Association Test
Description
Usage
Arguments
Details
See Also
Examples
Description
This function computes a distance matrix. The distance is estimated
as one minus the absolute value of the correlation coefficient 1 - abs(cor).
Usage
1
distCor(snp)
Arguments
snp
an object of class snpMatrix.
Details
See dist for details about the output object.
See Also
Examples
1
2
3
4
5
# file containing example data for SNP data
gfile <- system.file("extdata/snpdata.csv", package = "qtcat")
snp <- read.snpData(gfile, sep = ",")
dist <- distCor(snp[, 1:10])
QTCAT/qtcat documentation built on April 20, 2021, 11:20 p.m.
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Description Usage Arguments Details See Also Examples
Description
This function computes a distance matrix. The distance is estimated
as one minus the absolute value of the correlation coefficient 1 - abs(cor).
Usage
1 | distCor(snp)
|
Arguments
snp |
an object of class snpMatrix. |
Details
See dist for details about the output object.
See Also
Examples
1 2 3 4 5 | # file containing example data for SNP data
gfile <- system.file("extdata/snpdata.csv", package = "qtcat")
snp <- read.snpData(gfile, sep = ",")
dist <- distCor(snp[, 1:10])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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