alleleFreq-snpMatrix-method: Allele frequency
In QTCAT/qtcat: Quantitative Trait Cluster Association Test
Description
Usage
Arguments
Examples
Description
Allele frequency an object of class snpMatrix.
Usage
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## S4 method for signature 'snpMatrix'
alleleFreq(x, maf = TRUE)
Arguments
x
an object of class snpMatrix.
maf
logical, if true minor allele frequency (default), other ways allele
frequency of 'allele.1'.
Examples
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# file containing example data for SNP data
gfile <- system.file("extdata/snpdata.csv", package = "qtcat")
snp <- read.snpData(gfile, sep = ",")
af <- alleleFreq(snp)
QTCAT/qtcat documentation built on April 20, 2021, 11:20 p.m.
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Description Usage Arguments Examples
Description
Allele frequency an object of class snpMatrix.
Usage
1 2 | ## S4 method for signature 'snpMatrix'
alleleFreq(x, maf = TRUE)
|
Arguments
x |
an object of class snpMatrix. |
maf |
logical, if true minor allele frequency (default), other ways allele frequency of 'allele.1'. |
Examples
1 2 3 4 | # file containing example data for SNP data
gfile <- system.file("extdata/snpdata.csv", package = "qtcat")
snp <- read.snpData(gfile, sep = ",")
af <- alleleFreq(snp)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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