imputeSnp: Impute missing information at a medoid SNPs from a group of...
In QTCAT/qtcat: Quantitative Trait Cluster Association Test

Uses neighboring SNPs in the clustering hierarchy to impute as many as possible alleles to positions with missing values at medoid SNPs.

1 2	imputeSnp(inxSnpOfInt, snp, hier, hierLeafs, clust, medoSnps, naSnps, flipAlleles, min.absCor)

`inxSnpOfInt`	a vertor of the snp of interest.
`snp`	an object of class snpMatrix.
`hier`	an object of class hierarchy.
`hierLeafs`	a vector of leafs of the hierarchy.
`clust`	a named vector of clusters.
`medoSnps`	a vector of medo turue o false.
`naSnps`	a vector of NA indeces.
`flipAlleles`	a vertor of telling for each SNP if allele one has allele freq. > 0.5 or not.
`min.absCor`	a minimum value of correlation. If missing values still exist if this point in the hierarchy is reached, imputing is done via allele frequencies.