imputeSnpIter: Impute missing information at a medoid SNPs from a group of...
In QTCAT/qtcat: Quantitative Trait Cluster Association Test
Description
Uses neighboring SNPs in the clustering hierarchy to impute as many as
possible alleles to positions with missing values at medoid SNPs.
Usage
1
imputeSnpIter(snp, snpOfInt, inxSnpsToComp, snpOfIntFlip, flipAlleles)
Arguments
snp
an object of class snpMatrix.
snpOfInt
a vertor of the snp of interest.
inxSnpsToComp
a index of neighbors.
snpOfIntFlip
flip status of the snp of interest.
flipAlleles
a vertor of telling for each SNP if allele one has allele freq. > 0.5
or not.
min.absCor
a minimum value of correlation. If missing values still exist if this
point in the hierarchy is reached, imputing is done via allele frequencies.
QTCAT/qtcat documentation built on April 20, 2021, 11:20 p.m.
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Description
Uses neighboring SNPs in the clustering hierarchy to impute as many as possible alleles to positions with missing values at medoid SNPs.
Usage
1 | imputeSnpIter(snp, snpOfInt, inxSnpsToComp, snpOfIntFlip, flipAlleles)
|
Arguments
snp |
an object of class snpMatrix. |
snpOfInt |
a vertor of the snp of interest. |
inxSnpsToComp |
a index of neighbors. |
snpOfIntFlip |
flip status of the snp of interest. |
flipAlleles |
a vertor of telling for each SNP if allele one has allele freq. > 0.5 or not. |
min.absCor |
a minimum value of correlation. If missing values still exist if this point in the hierarchy is reached, imputing is done via allele frequencies. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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