cqc_drop_groups: Remove outlier groups from the result of 'cqc_check'.
In RGLab/cytoqc: Quality control and standardization of cytometry data

cqc_drop_groups

R Documentation

Remove outlier groups from the result of 'cqc_check'.

Description

Remove outlier groups from the result of 'cqc_check'.

Usage

cqc_drop_groups(groups, id)

Arguments

`groups`	the object returned by 'cqc_checks'
`id`	the group id to be dropped from the dataset

Examples

fcs_files <- list.files(system.file("extdata", "GvHD_QC", package = "cytoqc"), full.names = TRUE)
qc_cf_list <- cqc_load_fcs(fcs_files)
channel_groups <- cqc_check(qc_cf_list, type = "channel")
summary(channel_groups)
channel_groups <- cqc_drop_groups(channel_groups, 2)
channel_groups

RGLab/cytoqc documentation built on Jan. 25, 2023, 11:05 p.m.