cqc_drop_groups: Remove outlier groups from the result of 'cqc_check'.
In RGLab/cytoqc: Quality control and standardization of cytometry data
Description
Usage
Arguments
Examples
Description
Remove outlier groups from the result of 'cqc_check'.
Usage
1
cqc_drop_groups(groups, id)
Arguments
groups
the object returned by 'cqc_checks'
id
the group id to be dropped from the dataset
Examples
1
2
3
4
5
6
fcs_files <- list.files(system.file("extdata", "GvHD_QC", package = "cytoqc"), full.names = TRUE)
qc_cf_list <- cqc_load_fcs(fcs_files)
channel_groups <- cqc_check(qc_cf_list, type = "channel")
summary(channel_groups)
channel_groups <- cqc_drop_groups(channel_groups, 2)
channel_groups
RGLab/cytoqc documentation built on Nov. 25, 2020, 11:27 p.m.
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Description Usage Arguments Examples
Description
Remove outlier groups from the result of 'cqc_check'.
Usage
1 | cqc_drop_groups(groups, id)
|
Arguments
groups |
the object returned by 'cqc_checks' |
id |
the group id to be dropped from the dataset |
Examples
1 2 3 4 5 6 | fcs_files <- list.files(system.file("extdata", "GvHD_QC", package = "cytoqc"), full.names = TRUE)
qc_cf_list <- cqc_load_fcs(fcs_files)
channel_groups <- cqc_check(qc_cf_list, type = "channel")
summary(channel_groups)
channel_groups <- cqc_drop_groups(channel_groups, 2)
channel_groups
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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