cqc_get_data: Extract the data from the result of a 'cqc_check' call.

In RGLab/cytoqc: Quality control and standardization of cytometry data

Extract the data from the result of a cqc_check call.

Description

Extract the data from the result of a cqc_check call.

Usage

cqc_get_data(groups, id = NULL)

Arguments

groups	the object returned by cqc_checks
id	the group id to be selected from the dataset, default is NULL, meaning all data

Examples

fcs_files <- list.files(system.file("extdata", "GvHD_QC", package = "cytoqc"), full.names = TRUE)
qc_cf_list <- cqc_load_fcs(fcs_files)
channel_groups <- cqc_check(qc_cf_list, type = "channel")
summary(channel_groups)
group_3_cf_list <- cqc_get_data(channel_groups, 3)
# A list of cytoframes
group_3_cf_list

RGLab/cytoqc documentation built on Jan. 25, 2023, 11:05 p.m.