cqc_get_data: Extract the data from the result of a 'cqc_check' call.

Description Usage Arguments Examples

View source: R/cqc_check.R

Description

Extract the data from the result of a cqc_check call.

Usage

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cqc_get_data(groups, id = NULL)

Arguments

groups

the object returned by cqc_checks

id

the group id to be selected from the dataset, default is NULL, meaning all data

Examples

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fcs_files <- list.files(system.file("extdata", "GvHD_QC", package = "cytoqc"), full.names = TRUE)
qc_cf_list <- cqc_load_fcs(fcs_files)
channel_groups <- cqc_check(qc_cf_list, type = "channel")
summary(channel_groups)
group_3_cf_list <- cqc_get_data(channel_groups, 3)
# A list of cytoframes
group_3_cf_list

RGLab/cytoqc documentation built on Nov. 25, 2020, 11:27 p.m.