cqc_load_fcs: Load cqc_data

In RGLab/cytoqc: Quality control and standardization of cytometry data

Load cqc_data

Description

load fcs or h5 files into cqc_cf_list object which is a list of cytoframe objects. This is the method to construct the core data object for cytoqc.

Usage

cqc_load_fcs(files, ...)

cqc_load_cytoframe(files, ...)

Arguments

files	the fcs or h5 file paths
...	parameters passed to 'load_cytoframe_from_fcs' or 'load_cytoframe'

Examples

fcs_files <- list.files(system.file("extdata", "GvHD_QC", package = "cytoqc"), full.names = TRUE)
cqc_cf_list <- cqc_load_fcs(fcs_files)
## Not run: 
h5_files <- list.files(system.file("extdata", "gs_bcell_auto", package = "flowWorkspaceData"),
                       pattern = ".h5", full.names = TRUE)
cqc_cf_list <- cqc_load_cytoframe(h5_files)

## End(Not run)

RGLab/cytoqc documentation built on Jan. 25, 2023, 11:05 p.m.