Files in RGLab/openCyto
Hierarchical Gating Pipeline for flow cytometry data

.Rbuildignore

.github/ISSUE_TEMPLATE/bug_report.md

.github/workflows/build.yml

.gitignore

DESCRIPTION

Dockerfile

LICENSE

Makefile

NAMESPACE

NEWS.md R/AllClasses.R R/CytoExploreR_wrappers.R R/add.R R/add_pop.R R/as.data.table.R R/bayes-flowClust.R R/coerce.R R/cpp11.R R/csvTemplate-parser.R R/fast_rlm.R R/fcFilter-methods.R R/fcFilterList-methods.R R/fcTree-methods.R R/functions.R R/gating-functions.R R/gating-methods.R R/gatingTemplate-methods.R R/gtMethod-methods.R R/gtPopulation-methods.R R/list_to_array.R R/mindensity2.R R/pluginFramework.R R/preprocessing-method.R R/remove_pop.R R/robust_m_estimator.R R/singletGate.R R/solve_LSAP.R R/toggle.helperGates.R R/wrapper-functions.R R/zzz.R README.md

_pkgdown.yml

docs/404.html

docs/CNAME

docs/articles/HowToAutoGating.html

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inst/CITATION

inst/extdata/gating_template/ICS.csv

inst/extdata/gating_template/ICS_080.csv

inst/extdata/gating_template/ITN_Newell.csv

inst/extdata/gating_template/bcell.csv

inst/extdata/gating_template/tcell.csv

inst/extdata/gating_template/testGatingTemplate.csv

inst/extdata/gating_template/treg.csv

inst/figures/openCyto.png

logo_mid.png

man-roxygen/template-depr_fun.R man-roxygen/template-depr_pkg.R man/CytoExploreR_exports.Rd man/add.Rd man/as.data.table.Rd man/boolMethod-class.Rd man/dims-gtMethod-method.Rd man/dummyMethod-class.Rd man/fast_rlm.Rd man/fcEllipsoidGate-class.Rd man/fcEllipsoidGate.Rd man/fcFilter-class.Rd man/fcFilterList-class.Rd man/fcFilterList.Rd man/fcPolygonGate-class.Rd man/fcPolygonGate.Rd man/fcRectangleGate-class.Rd man/fcRectangleGate.Rd man/fcTree-class.Rd man/fcTree.Rd man/gate_flowclust_1d.Rd man/gate_flowclust_2d.Rd man/gate_mindensity.Rd man/gate_mindensity2.Rd man/gate_quad_sequential.Rd man/gate_quad_tmix.Rd man/gate_quantile.Rd man/gate_singlet.Rd man/gatingTemplate-class.Rd man/getGate-fcTree-character-method.Rd man/getNodes-fcTree-method.Rd man/gh_generate_template.Rd man/groupBy-gtMethod-method.Rd man/gs_add_gating_method.Rd man/gs_add_gating_method_init.Rd man/gs_remove_gating_method.Rd man/gtMethod-class.Rd man/gtPopulation-class.Rd man/gtSubsets-class.Rd man/gt_gating.Rd man/gt_get_children.Rd man/gt_get_gate.Rd man/gt_get_nodes.Rd man/gt_get_parent.Rd man/gt_list_methods.Rd man/gt_toggle_helpergates.Rd man/isCollapse-gtMethod-method.Rd man/names-gtMethod-method.Rd man/names-gtPopulation-method.Rd man/ocRectRefGate-class.Rd man/ocRectRefGate.Rd man/ocRectangleGate-class.Rd man/openCyto-deprecated.Rd man/openCyto.Rd man/openCyto.options.Rd man/parameters-gtMethod-method.Rd man/plot-fcFilterList-ANY-method.Rd man/plot-fcTree-character-method.Rd man/plot-gatingTemplate-missing-method.Rd man/polyFunctions-class.Rd man/posteriors-fcFilter-ANY-method.Rd man/ppMethod-class.Rd man/ppMethod-gatingTemplate-character-method.Rd man/preprocessing-ppMethod-GatingSet-method.Rd man/prior_flowclust.Rd man/priors-fcFilter-ANY-method.Rd man/refGate-class.Rd man/register_plugins.Rd man/robust_m_estimator.Rd man/show-boolMethod-method.Rd man/show-fcFilter-method.Rd man/show-gatingTemplate-method.Rd man/show-gtMethod-method.Rd

src/Hungarian.cpp

src/Hungarian.h

src/Makevars

src/cpp11.cpp

src/misc.cpp

src/rlm.cpp

src/solve_LSAP.cpp

src/unlockNamespace.cpp

sticker.R tests/testthat.R

tests/testthat/expectResults.rds

tests/testthat/gatingResults.rds

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vignettes/HowToWriteCSVTemplate.Rmd vignettes/openCytoVignette.Rmd

RGLab/openCyto documentation built on May 15, 2024, 3:26 a.m.

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RGLab/openCyto
Hierarchical Gating Pipeline for flow cytometry data

Files in RGLab/openCyto
Hierarchical Gating Pipeline for flow cytometry data

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RGLab/openCyto Hierarchical Gating Pipeline for flow cytometry data

Files in RGLab/openCyto Hierarchical Gating Pipeline for flow cytometry data

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RGLab/openCyto
Hierarchical Gating Pipeline for flow cytometry data

Files in RGLab/openCyto
Hierarchical Gating Pipeline for flow cytometry data