SUSIE_run: Run 'susieR' fine-mapping

In RajLabMSSM/echofinemap: echoverse module: Fine-mapping functions

Run susieR fine-mapping

Description

Finds the proper function to call from susieR (which can depend on which version is installed) and conducts statistical or functional fine-mapping using GWAS/QTL summary stats.

Usage

SUSIE_run(
  dat,
  LD_matrix,
  sample_size,
  max_causal,
  scaled_prior_variance,
  estimate_prior_variance,
  residual_variance,
  max_iter,
  estimate_prior_method,
  estimate_residual_variance,
  prior_weights,
  credset_thresh,
  plot_track_fit,
  verbose = TRUE
)

RajLabMSSM/echofinemap documentation built on Jan. 3, 2023, 1:42 a.m.