API for RogerGinBer/RHermes
Improving metabolome characterization using molecular formula databases

Global functions
DB Man page
DB,RHermesExp-method Man page
ExpParam Man page
ExpParam-class Man page
GLgroup Source code
GLprior Source code
GLtidy Source code
IL Man page
IL,RHermesExp,numeric-method Man page
ILParam Man page
ILParam-class Man page
Ident Man page
Ident,RHermesExp,numeric-method Man page
IonicForm Source code
IsoCalc Source code
MS2Data Man page
MS2Data,RHermesExp,numeric-method Man page
OptScanSearch Source code
PL Man page
PL,RHermesExp,numeric-method Man page
PLprocesser Source code
RHermesData Man page
RHermesData-class Man page
RHermesExp Man page
RHermesExp-class Man page
RHermesGUI Man page Source code
RHermesIL Man page
RHermesIL-class Man page
RHermesMS2Exp Man page
RHermesMS2Exp-class Man page
RHermesMeta Man page
RHermesMeta-class Man page
RHermesPL Man page
RHermesPL-class Man page
RHermesSOI Man page
RHermesSOI-class Man page
SOI Man page
SOI,RHermesExp,numeric-method Man page
SOIParam Man page
SOIParam-class Man page
SOIsim Man page
SOIsim,RHermesExp,numeric-method Man page
addAd Man page
addAd,RHermesExp,character,numeric-method Man page
adductTables Source code
adlist Man page
adlist,RHermesExp-method Man page
binarySearch Source code
blankSubstraction Source code
calculateSOICentwave Source code
calculate_MS2_distance Source code
calculate_XIC_estimation Source code
calculate_apex Source code
calculate_best_interval Source code
calculate_deep_IL Source code
calculate_ionic_forms Source code
check_adduct_validity Source code
cosineSim Source code
database_importer Source code
densityFilter Source code
densityProc Source code
duplicateSOI Source code
exportIL Man page
exportIL,RHermesExp,numeric-method Man page
exportIdent Man page
exportIdent,RHermesExp,numeric,character-method Man page
exportMGF Man page Source code
exportMSP Man page Source code
exportSIRIUS Man page Source code
exportmzML Man page
filterIL Man page
filterIL,RHermesExp,numeric,numeric-method Man page
filterSOI Man page
filterSOI,RHermesExp,numeric-method Man page
findSOI Man page
findSOI,RHermesExp-method Man page
firstCleaning Source code
generateIL Man page
generateIL,RHermesExp,numeric-method Man page
getSOIpar Man page
getSOIpar,ANY-method Man page
groupGrouper Source code
groupShort Source code
import_and_filter Source code
inclusionList Source code
injectionPlanner Source code
isocalc_parallel Source code
labelledProc Source code
multform Source code
parallelFilter Source code
parallelGroupShort Source code
pearsonSim Source code
plotCoverage Man page
plotCoverage,RHermesExp,numeric-method Man page
plotFidelity Man page
plotFidelity,RHermesExp,numeric,numeric-method Man page
plotIL Man page
plotIL,RHermesExp,numeric-method Man page
plotISF Man page
plotPL Man page
plotPL,RHermesExp,numeric,character-method Man page
plotRawMS2 Man page
plotRawMS2,RHermesExp,numeric-method Man page
plotSOI Man page
plotSOI,RHermesExp,numeric,character-method Man page
plotSS Man page
plotSS,RHermesExp,numeric,numeric-method Man page
prepareNetInput Source code
preparePlottingDF Source code
preprocessing Source code
processMS1 Man page
processMS1,RHermesExp,character-method Man page
processMS2 Man page
processMS2,RHermesExp,numeric,character,character-method Man page
readTime Man page
readTime,RHermesExp-method Man page
regularProc Source code
remAd Man page
remAd,RHermesExp,character-method Man page
removeISF Man page
removeSOI Man page
removeSOI,RHermesExp,numeric-method Man page
resolveGroup Source code
retrievePeaks Source code
setCluster Man page Source code
setDB Man page
setDB,RHermesExp-method Man page
setExpParam Man page
setExpParam,RHermesExp-method Man page
setTime Man page
setTime,RHermesExp,character-method Man page
show,ExpParam-method Man page
show,RHermesExp-method Man page
show,RHermesIL-method Man page
show,RHermesMS2Exp-method Man page
show,RHermesPL-method Man page
show,RHermesSOI-method Man page
show,SOIParam-method Man page
ssNetwork Man page Source code
subform Source code
sumform Source code
RogerGinBer/RHermes documentation built on Nov. 6, 2022, 11:34 a.m.