filterSOI: filterSOI

In RogerGinBer/RHermes: Improving metabolome characterization using molecular formula databases

filterSOI

Description

Performs a series of filters and quality checks to a given SOI list, removing unwanted SOIs in the process.

Usage

filterSOI(struct, id, minint = 10000, isofidelity, minscore = 0.8)

## S4 method for signature 'RHermesExp,numeric'
filterSOI(struct, id, minint = 10000, isofidelity, minscore = 0.8)

Arguments

struct	The RHermesExp object to which the SOI list will be saved.
id	ID of the SOI list to be filtered/checked.
minint	Minimun SOI intensity. All SOIs below this value will be removed from the SOI list
isofidelity	Boolean. Whether to perform an isotopic fidelity check.
minscore	Numeric. Minimum value (between 0 and 1) of isofidelity to retain an entry. Defaults to 0.8.

Value

A filtered SOI list.

Author(s)

Roger Gine

Examples

struct <- filterSOI(struct, id = 1, minint = 10000, isofidelity = TRUE)

RogerGinBer/RHermes documentation built on Nov. 6, 2022, 11:34 a.m.