plotRawMS2: plotRawMS2
In RogerGinBer/RHermes: Improving metabolome characterization using molecular formula databases
plotRawMS2 R Documentation
plotRawMS2
Description
Plots an all MS2 fragments distribution along the rt of a given
inclusion list entry.
Usage
plotRawMS2(struct, ms2id, entryid)
## S4 method for signature 'RHermesExp,numeric'
plotRawMS2(struct, ms2id, entryid)
Arguments
struct
An RHermesExp object
ms2id
Number of the MS2Exp object where the spectrum is
entryid
Number of the inclusion list entry to plot
Value
A list of four objects: a plot of the fragments grouped by their mz, a
plot of the fragments grouped by their shape similarity, the similarity
network and a summary table of peaks found and the group they belong to.
Author(s)
Roger Gine
See Also
Other plots:
plotFidelity(),
plotSOI(),
plotSS()
Examples
plotRawMS2(struct, 1, 2)
RogerGinBer/RHermes documentation built on Nov. 6, 2022, 11:34 a.m.
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| plotRawMS2 | R Documentation |
plotRawMS2
Description
Plots an all MS2 fragments distribution along the rt of a given inclusion list entry.
Usage
plotRawMS2(struct, ms2id, entryid) ## S4 method for signature 'RHermesExp,numeric' plotRawMS2(struct, ms2id, entryid)
Arguments
struct |
An RHermesExp object |
ms2id |
Number of the MS2Exp object where the spectrum is |
entryid |
Number of the inclusion list entry to plot |
Value
A list of four objects: a plot of the fragments grouped by their mz, a plot of the fragments grouped by their shape similarity, the similarity network and a summary table of peaks found and the group they belong to.
Author(s)
Roger Gine
See Also
Other plots:
plotFidelity(),
plotSOI(),
plotSS()
Examples
plotRawMS2(struct, 1, 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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