SOIsim: SOIsim

In RogerGinBer/RHermes: Improving metabolome characterization using molecular formula databases

SOIsim

Description

Calculates the elution profile similarity between SOIs.

Usage

SOIsim(struct, id, subset = NA, mode = "all")

## S4 method for signature 'RHermesExp,numeric'
SOIsim(struct, id, subset = NA, mode = "all")

Arguments

struct	The RHermesExp object.
id	The SOI list to be used.
subset	A subset of SOI list entries that you want to compare the profile similarities with. Defaults to NA, which means all the entries.
mode	Whether to compare the similarity with "all" other SOIs or only with those determined by subset. Defaults to "all", any other value restricts the comparison to the subset.

Value

A similarity matrix.

Author(s)

Roger Gine

Examples

if(FALSE){
myHermes <- SOIsim(myHermes, 2) #Remove the 2nd SOI list in the object
}

RogerGinBer/RHermes documentation built on Nov. 6, 2022, 11:34 a.m.