Files in RogerGinBer/RHermes

Improving metabolome characterization using molecular formula databases

.Rbuildignore

.Rhistory

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/Classes.R R/General_methods.R R/IL_functions.R R/IL_methods.R R/MS1_functions.R R/MS1_methods.R R/MS2_functions.R R/MS2_methods.R R/Metadata_functions.R R/Metadata_methods.R R/Plot_functions.R R/RHermesGUI.R R/SOI_functions.R R/SOI_methods.R R/Similarity_functions.R README.Rmd README.md

_pkgdown.yaml

docs/404.html

docs/_config.yml

docs/articles/RHermes_UserGuide.html

docs/articles/RHermes_UserGuide_files/crosstalk-1.1.1/css/crosstalk.css

docs/articles/RHermes_UserGuide_files/crosstalk-1.1.1/js/crosstalk.js

docs/articles/RHermes_UserGuide_files/crosstalk-1.1.1/js/crosstalk.js.map

docs/articles/RHermes_UserGuide_files/crosstalk-1.1.1/js/crosstalk.min.js

docs/articles/RHermes_UserGuide_files/crosstalk-1.1.1/js/crosstalk.min.js.map

docs/articles/RHermes_UserGuide_files/header-attrs-2.7/header-attrs.js

docs/articles/RHermes_UserGuide_files/htmlwidgets-1.5.3/htmlwidgets.js

docs/articles/RHermes_UserGuide_files/jquery-3.5.1/jquery-AUTHORS.txt

docs/articles/RHermes_UserGuide_files/jquery-3.5.1/jquery.js

docs/articles/RHermes_UserGuide_files/jquery-3.5.1/jquery.min.js

docs/articles/RHermes_UserGuide_files/jquery-3.5.1/jquery.min.map

docs/articles/RHermes_UserGuide_files/plotly-binding-4.9.3/plotly.js

docs/articles/RHermes_UserGuide_files/plotly-htmlwidgets-css-1.57.1/plotly-htmlwidgets.css

docs/articles/RHermes_UserGuide_files/plotly-main-1.57.1/plotly-latest.min.js

docs/articles/RHermes_UserGuide_files/typedarray-0.1/typedarray.min.js

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/CliqueMSMS.html

docs/reference/Cluster.html

docs/reference/DB.html

docs/reference/ExpParam-class.html

docs/reference/FileProc.html

docs/reference/IL.html

docs/reference/ILParam-class.html

docs/reference/ILplot.html

docs/reference/Ident.html

docs/reference/MS2Data.html

docs/reference/MS2Proc.html

docs/reference/PL.html

docs/reference/RHermesData-class.html

docs/reference/RHermesExp-class.html

docs/reference/RHermesGUI.html

docs/reference/RHermesIL-class.html

docs/reference/RHermesMS2Exp-class.html

docs/reference/RHermesMeta-class.html

docs/reference/RHermesPL-class.html

docs/reference/RHermesSOI-class.html

docs/reference/RawMS2Plot.html

docs/reference/Rplot001.png

docs/reference/Rplot002.png

docs/reference/SOI.html

docs/reference/SOIParam-class.html

docs/reference/SOIfinder.html

docs/reference/SOIsim.html

docs/reference/SSPlot.html

docs/reference/addAd.html

docs/reference/adlist.html

docs/reference/exportIL.html

docs/reference/exportIdent.html

docs/reference/exportMGF.html

docs/reference/exportMSP.html

docs/reference/exportSIRIUS.html

docs/reference/exportmzML.html

docs/reference/figures/README-pressure-1.png

docs/reference/filterIL.html

docs/reference/filterSOI.html

docs/reference/findSOI.html

docs/reference/genIL.html

docs/reference/generateIL.html

docs/reference/getSOIpar.html

docs/reference/index.html

docs/reference/plotCoverage.html

docs/reference/plotFidelity.html

docs/reference/plotIL.html

docs/reference/plotISF.html

docs/reference/plotPL.html

docs/reference/plotRawMS2-1.png

docs/reference/plotRawMS2-2.png

docs/reference/plotRawMS2.html

docs/reference/plotSOI.html

docs/reference/plotSS.html

docs/reference/processMS1.html

docs/reference/processMS2.html

docs/reference/readTime.html

docs/reference/remAd.html

docs/reference/removeISF.html

docs/reference/removeSOI.html

docs/reference/setCluster.html

docs/reference/setDB.html

docs/reference/setExpParam.html

docs/reference/setTime.html

docs/reference/ssNetwork.html

docs/sitemap.xml

inst/app/ExtraInfo_UI.R inst/app/IL_UI.R inst/app/IO_UI.R inst/app/Identifications_UI.R inst/app/MS2PlotUI.R inst/app/MS2_UI.R inst/app/PLPlotUI.R inst/app/PL_UI.R inst/app/SOI_UI.R inst/app/SOIplotUI.R inst/app/Settings_UI.R inst/app/app.R

inst/app/www/InstrumentTemplates.csv

inst/app/www/SOIFilterParams.csv

inst/app/www/SOITemplates.csv

inst/app/www/customStyle.css

inst/app/www/scroll.js

inst/app/www/step1.svg

inst/app/www/step2.svg

inst/app/www/step3.svg

inst/app/www/styles.css

inst/extdata/InstrumentTemplates.csv

inst/extdata/MS1TestData.mzML

inst/extdata/SOIFilterParams.csv

inst/extdata/SOITemplates.csv

inst/extdata/exampleObject.rds

inst/extdata/hmdb.csv

inst/extdata/keggModuleNames.csv

inst/extdata/keggOrganismNames.csv

inst/extdata/negAds.csv

inst/extdata/norman.xlsx

inst/extdata/posAds.csv

man/DB.Rd man/ExpParam-class.Rd man/IL.Rd man/ILParam-class.Rd man/Ident.Rd man/MS2Data.Rd man/PL.Rd man/RHermesData-class.Rd man/RHermesExp-class.Rd man/RHermesGUI.Rd man/RHermesIL-class.Rd man/RHermesMS2Exp-class.Rd man/RHermesMeta-class.Rd man/RHermesPL-class.Rd man/RHermesSOI-class.Rd man/SOI.Rd man/SOIParam-class.Rd man/SOIsim.Rd man/addAd.Rd man/adlist.Rd man/exportIL.Rd man/exportIdent.Rd man/exportMGF.Rd man/exportMSP.Rd man/exportSIRIUS.Rd man/exportmzML.Rd

man/figures/README-pressure-1.png

man/filterIL.Rd man/filterSOI.Rd man/findSOI.Rd man/generateIL.Rd man/getSOIpar.Rd man/plotCoverage.Rd man/plotFidelity.Rd man/plotIL.Rd man/plotISF.Rd man/plotPL.Rd man/plotRawMS2.Rd man/plotSOI.Rd man/plotSS.Rd man/processMS1.Rd man/processMS2.Rd man/readTime.Rd man/remAd.Rd man/removeISF.Rd man/removeSOI.Rd man/setCluster.Rd man/setDB.Rd man/setExpParam.Rd man/setTime.Rd man/ssNetwork.Rd tests/testthat.R tests/testthat/test-GUI.R tests/testthat/test-IL.R tests/testthat/test-MSMS.R tests/testthat/test-Methods.R tests/testthat/test-PL.R tests/testthat/test-SOI.R tests/testthat/test-prePL.R vignettes/RHermes_UserGuide.R vignettes/RHermes_UserGuide.Rmd

RogerGinBer/RHermes documentation built on Nov. 6, 2022, 11:34 a.m.