Files in RogerGinBer/RHermes
Improving metabolome characterization using molecular formula databases
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/Classes.R
R/General_methods.R
R/IL_functions.R
R/IL_methods.R
R/MS1_functions.R
R/MS1_methods.R
R/MS2_functions.R
R/MS2_methods.R
R/Metadata_functions.R
R/Metadata_methods.R
R/Plot_functions.R
R/RHermesGUI.R
R/SOI_functions.R
R/SOI_methods.R
R/Similarity_functions.R
README.Rmd
README.md
_pkgdown.yaml
docs/404.html
docs/_config.yml
docs/articles/RHermes_UserGuide.html
docs/articles/RHermes_UserGuide_files/crosstalk-1.1.1/css/crosstalk.css
docs/articles/RHermes_UserGuide_files/crosstalk-1.1.1/js/crosstalk.js
docs/articles/RHermes_UserGuide_files/crosstalk-1.1.1/js/crosstalk.js.map
docs/articles/RHermes_UserGuide_files/crosstalk-1.1.1/js/crosstalk.min.js
docs/articles/RHermes_UserGuide_files/crosstalk-1.1.1/js/crosstalk.min.js.map
docs/articles/RHermes_UserGuide_files/header-attrs-2.7/header-attrs.js
docs/articles/RHermes_UserGuide_files/htmlwidgets-1.5.3/htmlwidgets.js
docs/articles/RHermes_UserGuide_files/jquery-3.5.1/jquery-AUTHORS.txt
docs/articles/RHermes_UserGuide_files/jquery-3.5.1/jquery.js
docs/articles/RHermes_UserGuide_files/jquery-3.5.1/jquery.min.js
docs/articles/RHermes_UserGuide_files/jquery-3.5.1/jquery.min.map
docs/articles/RHermes_UserGuide_files/plotly-binding-4.9.3/plotly.js
docs/articles/RHermes_UserGuide_files/plotly-htmlwidgets-css-1.57.1/plotly-htmlwidgets.css
docs/articles/RHermes_UserGuide_files/plotly-main-1.57.1/plotly-latest.min.js
docs/articles/RHermes_UserGuide_files/typedarray-0.1/typedarray.min.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/CliqueMSMS.html
docs/reference/Cluster.html
docs/reference/DB.html
docs/reference/ExpParam-class.html
docs/reference/FileProc.html
docs/reference/IL.html
docs/reference/ILParam-class.html
docs/reference/ILplot.html
docs/reference/Ident.html
docs/reference/MS2Data.html
docs/reference/MS2Proc.html
docs/reference/PL.html
docs/reference/RHermesData-class.html
docs/reference/RHermesExp-class.html
docs/reference/RHermesGUI.html
docs/reference/RHermesIL-class.html
docs/reference/RHermesMS2Exp-class.html
docs/reference/RHermesMeta-class.html
docs/reference/RHermesPL-class.html
docs/reference/RHermesSOI-class.html
docs/reference/RawMS2Plot.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/SOI.html
docs/reference/SOIParam-class.html
docs/reference/SOIfinder.html
docs/reference/SOIsim.html
docs/reference/SSPlot.html
docs/reference/addAd.html
docs/reference/adlist.html
docs/reference/exportIL.html
docs/reference/exportIdent.html
docs/reference/exportMGF.html
docs/reference/exportMSP.html
docs/reference/exportSIRIUS.html
docs/reference/exportmzML.html
docs/reference/figures/README-pressure-1.png
docs/reference/filterIL.html
docs/reference/filterSOI.html
docs/reference/findSOI.html
docs/reference/genIL.html
docs/reference/generateIL.html
docs/reference/getSOIpar.html
docs/reference/index.html
docs/reference/plotCoverage.html
docs/reference/plotFidelity.html
docs/reference/plotIL.html
docs/reference/plotISF.html
docs/reference/plotPL.html
docs/reference/plotRawMS2-1.png
docs/reference/plotRawMS2-2.png
docs/reference/plotRawMS2.html
docs/reference/plotSOI.html
docs/reference/plotSS.html
docs/reference/processMS1.html
docs/reference/processMS2.html
docs/reference/readTime.html
docs/reference/remAd.html
docs/reference/removeISF.html
docs/reference/removeSOI.html
docs/reference/setCluster.html
docs/reference/setDB.html
docs/reference/setExpParam.html
docs/reference/setTime.html
docs/reference/ssNetwork.html
docs/sitemap.xml
inst/app/ExtraInfo_UI.R
inst/app/IL_UI.R
inst/app/IO_UI.R
inst/app/Identifications_UI.R
inst/app/MS2PlotUI.R
inst/app/MS2_UI.R
inst/app/PLPlotUI.R
inst/app/PL_UI.R
inst/app/SOI_UI.R
inst/app/SOIplotUI.R
inst/app/Settings_UI.R
inst/app/app.R
inst/app/www/InstrumentTemplates.csv
inst/app/www/SOIFilterParams.csv
inst/app/www/SOITemplates.csv
inst/app/www/customStyle.css
inst/app/www/scroll.js
inst/app/www/step1.svg
inst/app/www/step2.svg
inst/app/www/step3.svg
inst/app/www/styles.css
inst/extdata/InstrumentTemplates.csv
inst/extdata/MS1TestData.mzML
inst/extdata/SOIFilterParams.csv
inst/extdata/SOITemplates.csv
inst/extdata/exampleObject.rds
inst/extdata/hmdb.csv
inst/extdata/keggModuleNames.csv
inst/extdata/keggOrganismNames.csv
inst/extdata/negAds.csv
inst/extdata/norman.xlsx
inst/extdata/posAds.csv
man/DB.Rd
man/ExpParam-class.Rd
man/IL.Rd
man/ILParam-class.Rd
man/Ident.Rd
man/MS2Data.Rd
man/PL.Rd
man/RHermesData-class.Rd
man/RHermesExp-class.Rd
man/RHermesGUI.Rd
man/RHermesIL-class.Rd
man/RHermesMS2Exp-class.Rd
man/RHermesMeta-class.Rd
man/RHermesPL-class.Rd
man/RHermesSOI-class.Rd
man/SOI.Rd
man/SOIParam-class.Rd
man/SOIsim.Rd
man/addAd.Rd
man/adlist.Rd
man/exportIL.Rd
man/exportIdent.Rd
man/exportMGF.Rd
man/exportMSP.Rd
man/exportSIRIUS.Rd
man/exportmzML.Rd
man/figures/README-pressure-1.png
man/filterIL.Rd
man/filterSOI.Rd
man/findSOI.Rd
man/generateIL.Rd
man/getSOIpar.Rd
man/plotCoverage.Rd
man/plotFidelity.Rd
man/plotIL.Rd
man/plotISF.Rd
man/plotPL.Rd
man/plotRawMS2.Rd
man/plotSOI.Rd
man/plotSS.Rd
man/processMS1.Rd
man/processMS2.Rd
man/readTime.Rd
man/remAd.Rd
man/removeISF.Rd
man/removeSOI.Rd
man/setCluster.Rd
man/setDB.Rd
man/setExpParam.Rd
man/setTime.Rd
man/ssNetwork.Rd
tests/testthat.R
tests/testthat/test-GUI.R
tests/testthat/test-IL.R
tests/testthat/test-MSMS.R
tests/testthat/test-Methods.R
tests/testthat/test-PL.R
tests/testthat/test-SOI.R
tests/testthat/test-prePL.R
vignettes/RHermes_UserGuide.R
vignettes/RHermes_UserGuide.Rmd
