startCodonMetrics: Get start codon bias usage
In Roleren/uORFomePipe: uORF prediction in R
View source: R/ClassifierStats.R
startCodonMetrics R Documentation
Get start codon bias usage
Description
Usually something like this
good: ATG, CTG, ACG and GTG
bad: AAG AND AGG
Usage
startCodonMetrics(
hits,
tissue = NULL,
StartCodons = getAllSequenceFeaturesTable()$StartCodons
)
Arguments
hits
a logical vector of TRUE, FALSE (TRUE is predicted)
tissue
default NULL, or a character name of tissue to print
StartCodons
character, sequences of start codons, default:
getAllSequenceFeaturesTable()$StartCodons
Roleren/uORFomePipe documentation built on Jan. 14, 2024, 5:11 a.m.
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View source: R/ClassifierStats.R
| startCodonMetrics | R Documentation |
Get start codon bias usage
Description
Usually something like this good: ATG, CTG, ACG and GTG bad: AAG AND AGG
Usage
startCodonMetrics(
hits,
tissue = NULL,
StartCodons = getAllSequenceFeaturesTable()$StartCodons
)
Arguments
hits |
a logical vector of TRUE, FALSE (TRUE is predicted) |
tissue |
default NULL, or a character name of tissue to print |
StartCodons |
character, sequences of start codons, default: getAllSequenceFeaturesTable()$StartCodons |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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