validateInputs: Validation of experiments
In Roleren/uORFomePipe: uORF prediction in R
validateInputs R Documentation
Validation of experiments
Description
Validation of experiments
Usage
validateInputs(df.rfp, df.rna, df.cage, mode)
Arguments
df.rfp
ORFik experiment of Ribo-seq
df.rna
ORFik experiment of RNA-seq,
set to NULL if you don't have RNA-seq
df.cage
ORFik experiment of CAGE,
set to NULL if you don't have CAGE.
mode
character, default: "uORF". alternative "aCDS". Do you want to predict
on uORFs or artificial CDS. if "aCDS" will run twice once for whole length CDS and one for
truncated CDS to validate model works for short ORFs. "CDS" is option to predict on
whole CDS.
Roleren/uORFomePipe documentation built on Jan. 14, 2024, 5:11 a.m.
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| validateInputs | R Documentation |
Validation of experiments
Description
Validation of experiments
Usage
validateInputs(df.rfp, df.rna, df.cage, mode)
Arguments
df.rfp |
ORFik experiment of Ribo-seq |
df.rna |
ORFik experiment of RNA-seq, set to NULL if you don't have RNA-seq |
df.cage |
ORFik experiment of CAGE, set to NULL if you don't have CAGE. |
mode |
character, default: "uORF". alternative "aCDS". Do you want to predict on uORFs or artificial CDS. if "aCDS" will run twice once for whole length CDS and one for truncated CDS to validate model works for short ORFs. "CDS" is option to predict on whole CDS. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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