DataSummary: Data summary

In SCBIT-YYLab/DRAP: Drug Response Analysis Tailored for Drug Testing on Patient-Derived Tumor Models

Description

Summarize the mean, SD, SE, and sample size of each arm in input data.

Usage

DataSummary(data, type, pattern = c("oneAN", "TAN"), measure.var, group.vars)

Arguments

data	a data frame of measured tumor vloume data or body weight data of mouse.
type	the type of data, "Vomule" or "BodyWeight".
pattern	the pattern of PDX trial design, "oneAN" or "TAN".
measure.var	the measured variable, such as "Volume", "BodyWeight".
group.vars	the group variables.

Value

A data frame including the sample size, mean, SD, SE of group variables.

Examples

## summary the tumor volume data of oneAN pattern
data(oneAN.volume.data)
oneAN.volume.data[1:10,]
oneAN.v.s <- DataSummary(data = oneAN.volume.data,
                         type = 'Volume',
                         pattern = 'oneAN',
                         measure.var = 'Volume',
                         group.vars = c('Arms','Times'))
head(oneAN.v.s)

## summary the body weight data of oneAN pattern
data(oneAN.bw.data)
oneAN.bw.data[1:10,]
oneAN.bw.s <-DataSummary(data = oneAN.bw.data,
                         type = 'BodyWeight',
                         pattern = 'oneAN',
                         measure.var = 'BodyWeight',
                         group.vars = c('Arms','Times'))
head(oneAN.bw.s)


## summary the tumor volume data of TAN pattern
data(TAN.volume.data)
TAN.volume.data[1:10,]
TAN.v.s <- DataSummary(data = TAN.volume.data,
                       type = 'Volume',
                       pattern = 'TAN',
                       measure.var = 'Volume',
                       group.vars = c('Tumor','Arms','Times'))
head(TAN.v.s)

## summary the body weight data of TAN pattern
data(TAN.bw.data)
TAN.bw.data[1:10,]
TAN.bw.s <- DataSummary(data = TAN.bw.data,
                        type = 'BodyWeight',
                        pattern = 'TAN',
                        measure.var = 'BodyWeight',
                        group.vars = c('Tumor','Arms','Times'))
head(TAN.bw.s)

SCBIT-YYLab/DRAP documentation built on April 7, 2020, 2:03 a.m.