plotTGI: TGI visulizing

In SCBIT-YYLab/DRAP: Drug Response Analysis Tailored for Drug Testing on Patient-Derived Tumor Models

Description

Visulize TGI of each Arms.

Usage

plotTGI(data, pattern, scope = c('end.point','all.point'),orders=NULL, ...)

Arguments

data	the output of function TGI.
pattern	the pattern of PDX trial design, "oneAN" or "TAN".
scope	the scope of time point to visulize, whether "end,point" or "all.point".
orders	the redefined order for visulization. For oneAN pattern,the order is redifined orders of the 'Arms'; for TAN pattern, the order is redifined orders of the 'Tumor'.
...	other parameters passed to ggplot.

Examples

### oneAN pattern
data(oneAN.volume.data)
oneAN.tgi <- TGI(data = oneAN.volume.data,neg.control = 'Control',method = 'AUC',pattern = 'oneAN')
plotTGI(oneAN.tgi,pattern = 'oneAN',scope = 'end.point')
plotTGI(oneAN.tgi,pattern = 'oneAN',scope = 'all.point')


### TAN pattern
data(TAN.volume.data)
TAN.tgi <- TGI(TAN.volume.data,  neg.control = 'Control',pattern = 'TAN',method = 'AUC')
plotTGI(TAN.tgi,pattern = 'TAN',scope = 'end.point')
plotTGI(TAN.tgi,pattern = 'TAN',scope = 'all.point')

SCBIT-YYLab/DRAP documentation built on April 7, 2020, 2:03 a.m.