plotVolumeGC: Plot growth curves of tumor volume data

In SCBIT-YYLab/DRAP: Drug Response Analysis Tailored for Drug Testing on Patient-Derived Tumor Models

Description

Plot growth curves of tumor volume data.

Usage

plotVolumeGC(data, level = c('Animal','Arm'), 
             pattern = c("OneAN", "TAN"), orders = NULL, 
             position.dodge, ...)

Arguments

data	a data frame of measured tumor volume data.
level	the level to present, "Animal" level or "Arm" level.
pattern	the pattern of PDX trial design, "OneAN" or "TAN".
orders	the redefined order for visulization. For oneAN pattern,the order is redifined orders of the 'Arms'; for TAN pattern, the order is redifined orders of the 'Tumor'.
position.dodge	Dodging preserves the vertical position of an geom while adjusting the horizontal position.
...	other parameters passed to ggplot.

Examples

### oneAN pattern
data(oneAN.volume.data)
# Animal level
plotVolumeGC(data = oneAN.volume.data,
             level = 'Animal',pattern = 'oneAN')

# Arm level
plotVolumeGC(data = oneAN.volume.data,level = 'Arm',
             pattern = 'oneAN',position.dodge = 0.5)

## reset order of Arms
orders <- unique(oneAN.volume.data$Arms)
orders <- orders[c(2:6,1)]
plotVolumeGC(data = oneAN.volume.data,level = 'Animal',
             pattern = 'oneAN',orders = orders)


### TAN pattern
data(TAN.volume.data)
# Animal level
plotVolumeGC(data = TAN.volume.data,level = 'Animal',
             pattern = 'TAN')

# Arm level
plotVolumeGC(data = TAN.volume.data,level = 'Arm',
             pattern = 'TAN',position.dodge = 0.5)

## reset order of tumors
orders <- unique(TAN.volume.data$Tumor)
orders <- orders[c(2:4,1)]
plotVolumeGC(data = TAN.volume.data,level = 'Animal',
             pattern = 'TAN',orders = orders)
plotVolumeGC(data = TAN.volume.data,level = 'Arm',
             pattern = 'TAN',orders = orders,position.dodge = 0.5)

SCBIT-YYLab/DRAP documentation built on April 7, 2020, 2:03 a.m.