Files in ShellyCoder/cellcall
inference of intercellular networks from single-cell transcriptomics
.Rbuildignore
.Rhistory
DESCRIPTION
NAMESPACE
R/CreateObject_fromSeurat.R
R/GSEA.R
R/LR2TF.R
R/ViewInterCircos.R
R/counts2rpm.R
R/data2Bubble.R
R/data2ConnectProfile.R
R/getCorrelatedGene.R
R/getDistanceKEGG.R
R/getPheatmap.R
R/getSignificantPathway.R
R/myGSEAplot.R
R/plotBubble.R
R/sankey.R
R/sankey3D.R
R/shellyFunction.R
R/step0_createObject.R
R/step1_TransConnectProfile.R
R/tfRidgeplot.R
README.md
cellcall.Rproj
inst/extdata/KEGG_SYMBOL_ID.txt
inst/extdata/example_Data.Rdata
inst/extdata/homo/exon_sum.Rdata
inst/extdata/homo/transcriptmaxLength.Rdata
inst/extdata/mmus/exon_sum.Rdata
inst/extdata/mmus/transcriptmaxLength.Rdata
inst/extdata/new_ligand_receptor_TFs.txt
inst/extdata/new_ligand_receptor_TFs_extended.txt
inst/extdata/new_ligand_receptor_TFs_homology.txt
inst/extdata/new_ligand_receptor_TFs_homology_extended.txt
inst/extdata/tf_target.txt
inst/extdata/tf_target_homology.txt
man/CellInter-class.Rd
man/ConnectProfile.Rd
man/CreateNichConObject.Rd
man/LR2TF.Rd
man/LRT.Dimplot.Rd
man/TransCommuProfile.Rd
man/ViewInterCircos.Rd
man/counts2normalized_10X.Rd
man/counts2normalized_smartseq2.Rd
man/getCorrelatedGene.Rd
man/getDistanceKEGG.Rd
man/getForBubble.Rd
man/getGSEA.Rd
man/getGSEAplot.Rd
man/getHyperPathway.Rd
man/mylog2foldChange.diy.Rd
man/plotBubble.Rd
man/ridgeplot.DIY.Rd
man/sankey_graph.Rd
man/trans2tripleScore.Rd
man/viewPheatmap.Rd
