getGSEA: calculate enrich for each celltype with all regulons
In ShellyCoder/cellcall: inference of intercellular networks from single-cell transcriptomics
getGSEA R Documentation
calculate enrich for each celltype with all regulons
Description
calculate enrich for each celltype with all regulons
Usage
getGSEA(term_gene_list, FC_OF_CELL, minGSSize = 5, maxGSSize = 500)
Arguments
term_gene_list
all regulons of genes denotes geneSet
FC_OF_CELL
the cell type which you want to calculate the foldchange
minGSSize
set the min size of each geneSet
maxGSSize
set the max size of each geneSet
Value
the enrich result of each celltype with all regulons
ShellyCoder/cellcall documentation built on Oct. 11, 2023, 2:50 p.m.
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| getGSEA | R Documentation |
calculate enrich for each celltype with all regulons
Description
calculate enrich for each celltype with all regulons
Usage
getGSEA(term_gene_list, FC_OF_CELL, minGSSize = 5, maxGSSize = 500)
Arguments
term_gene_list |
all regulons of genes denotes geneSet |
FC_OF_CELL |
the cell type which you want to calculate the foldchange |
minGSSize |
set the min size of each geneSet |
maxGSSize |
set the max size of each geneSet |
Value
the enrich result of each celltype with all regulons
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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