getCorrelatedGene: get relation among specific TF

In ShellyCoder/cellcall: inference of intercellular networks from single-cell transcriptomics

get relation among specific TF

Description

get relation among specific TF

Usage

getCorrelatedGene(
  data,
  cell_type = "",
  tf,
  target_list,
  pValue = 0.05,
  corValue = 0,
  topGene = 0.1
)

Arguments

data	a dataframe with row of gene and column of sample
cell_type	specific cell type
tf	choose one specific TF
target_list	choose target genes corresponding TF
pValue	set the pValue of spearman
corValue	set the corValue of spearman
topGene	use topTargetCor of candidate genes which has firlter by above parameters, default is 1, means 100%

Value

result target genes in this regulon

ShellyCoder/cellcall documentation built on Oct. 11, 2023, 2:50 p.m.