viewPheatmap: plot pheatmap graph with communication profile

In ShellyCoder/cellcall: inference of intercellular networks from single-cell transcriptomics

plot pheatmap graph with communication profile

Description

plot pheatmap graph with communication profile

Usage

viewPheatmap(
  object,
  slot = "expr_l_r_log2_scale",
  show_rownames = T,
  show_colnames = T,
  treeheight_row = 0,
  treeheight_col = 50,
  cluster_rows = T,
  cluster_cols = F,
  fontsize = 12,
  angle_col = "45",
  color = NULL,
  main = "score"
)

Arguments

object	a Cellwave objects
slot	plot the graph with the data of specific slot
show_rownames	boolean specifying if column names are be shown.
show_colnames	boolean specifying if column names are be shown.
treeheight_row	the height of a tree for rows, if these are clustered. Default value 0 points.
treeheight_col	the height of a tree for columns, if these are clustered. Default value 50 points.
cluster_rows	boolean values determining if rows should be clustered or hclust object,
cluster_cols	boolean values determining if columns should be clustered or hclust object.
fontsize	base fontsize for the plot
angle_col	angle of the column labels, right now one can choose only from few predefined options (0, 45, 90, 270 and 315)
color	vector of colors used in heatmap.
main	the title of the plot, default is "score".

ShellyCoder/cellcall documentation built on Oct. 11, 2023, 2:50 p.m.