getGSEAplot: plot enrichment graph
In ShellyCoder/cellcall: inference of intercellular networks from single-cell transcriptomics
getGSEAplot R Documentation
plot enrichment graph
Description
plot enrichment graph
Usage
getGSEAplot(
gsea.list,
myCelltype,
fc.list,
geneSetID,
selectedGeneID = NULL,
mycol = NULL
)
Arguments
gsea.list
a list of enrichment result from cellwave
myCelltype
the cell type of receiver cell
fc.list
foldchange list in the cellwave object
geneSetID
the character of TF symbol, only significant activated can be inspected
selectedGeneID
default is NULL, label the position of specific gene in FC flow.
mycol
the color of each TF. the length is consistent with geneSetID
ShellyCoder/cellcall documentation built on Oct. 11, 2023, 2:50 p.m.
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| getGSEAplot | R Documentation |
plot enrichment graph
Description
plot enrichment graph
Usage
getGSEAplot(
gsea.list,
myCelltype,
fc.list,
geneSetID,
selectedGeneID = NULL,
mycol = NULL
)
Arguments
gsea.list |
a list of enrichment result from cellwave |
myCelltype |
the cell type of receiver cell |
fc.list |
foldchange list in the cellwave object |
geneSetID |
the character of TF symbol, only significant activated can be inspected |
selectedGeneID |
default is NULL, label the position of specific gene in FC flow. |
mycol |
the color of each TF. the length is consistent with geneSetID |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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