getHyperPathway: enrich communication relation on the pathway

In ShellyCoder/cellcall: inference of intercellular networks from single-cell transcriptomics

enrich communication relation on the pathway

Description

enrich communication relation on the pathway

Usage

getHyperPathway(data, cella_cellb, IS_core = TRUE, Org = "Homo sapiens")

Arguments

data	a dataframe of communication score with row LR and column cellA-cellB
cella_cellb	explore the LR between sender cellA and receiver cellB, eg: "A-B"
IS_core	logical variable ,whether use reference LR data or include extended datasets
Org	choose the species source of gene, only "Homo sapiens" in this version.

Value

the dataframe with column: Pvalue, Jaccard, NES and pathway

ShellyCoder/cellcall documentation built on Oct. 11, 2023, 2:50 p.m.