Files in Subhayan18/CRUST
Multi-regional clonal deconvolution of tumor sequencing data
CRUST.Rproj
CRUST_1.0.1.pdf
DESCRIPTION
NAMESPACE
R/AlleleComp.R
R/ChromSeg.R
R/CopySeg_falcon.R
R/CopySeg_sequenza.R
R/T.goodness.test.R
R/View_summary.R
R/arrange.vars.R
R/cluster.doc.R
R/cluster.doubt.R
R/extdata.R
R/global.variables.R
R/imported.packages.R
R/match.maker.R
R/mutect2.qc.R
R/pqn.R
R/seg.track.R
R/segment.plot.R
R/seqn.scale.R
R/sysdata.rda
R/unexported_functions.R
R/variant.auto.plot.R
R/variant.plot.R
README.md
WES.tsv
auxiliary scripts/read_vcfs_fromDIR.R
data/Neuroblastoma.rda
data/metastasis_1.rda
data/metastasis_2.rda
data/primary_1.rda
data/primary_2.rda
data/test.dat.rda
man/AlleleComp.Rd
man/CopySeg_falcon.Rd
man/CopySeg_sequenza.Rd
man/Neuroblastoma.Rd
man/T.goodness.test.Rd
man/View_summary.Rd
man/cluster.doc.Rd
man/cluster.doubt.Rd
man/match.maker.Rd
man/metastasis_1.Rd
man/metastasis_2.Rd
man/mutect2.qc.Rd
man/primary_1.Rd
man/primary_2.Rd
man/segment.plot.Rd
man/seqn.scale.Rd
man/test.dat.Rd
man/variant.auto.plot.Rd
man/variant.plot.Rd
source/AC.1.jpg
source/AC.2.jpg
source/AC.3.jpg
source/AC.4.jpg
source/ES.1.jpg
source/ES.1.png
source/ES.2.jpg
source/ES.3.jpg
source/ES.4.1.jpg
source/ES.5.1.jpg
source/test.dat.1.png
source/test.dat.2.png
source/test.dat.3.png
