R/arrange.vars.R

In Subhayan18/CRUST: Multi-regional clonal deconvolution of tumor sequencing data

arrange.vars <- function(data, vars){
  ##stop if not a data.frame (but should work for matrices as well)
  stopifnot(is.data.frame(data))

  ##sort out inputs
  data.nms <- names(data)
  var.nr <- length(data.nms)
  var.nms <- names(vars)
  var.pos <- vars
  ##sanity checks
  stopifnot( !any(duplicated(var.nms)),
             !any(duplicated(var.pos)) )
  stopifnot( is.character(var.nms),
             is.numeric(var.pos) )
  stopifnot( all(var.nms %in% data.nms) )
  stopifnot( all(var.pos > 0),
             all(var.pos <= var.nr) )

  ##prepare output
  out.vec <- character(var.nr)
  out.vec[var.pos] <- var.nms
  out.vec[-var.pos] <- data.nms[ !(data.nms %in% var.nms) ]
  stopifnot( length(out.vec)==var.nr )

  ##re-arrange vars by position
  data <- data[ , out.vec]
  return(data)
}