runSimulations: Run openMalaria scenarios

In SwissTPH/r-openMalariaUtilities: Helper functions to provide easier usage of Open Malaria from R

Run openMalaria scenarios

Description

Generates a system call to launch OpenMalaria with the correct parameters for each scenario found in the directory. It is assumed that OpenMalaria is available in the PATH.

Usage

runSimulations(
  scenarios = NULL,
  cmd = "openMalaria",
  dryRun = FALSE,
  verbose = FALSE,
  ncores = 1,
  rowStart = NULL,
  rowEnd = NULL
)

run_simulations(
  scenarios = NULL,
  cmd = "openMalaria",
  dryRun = FALSE,
  verbose = FALSE,
  ncores = 1,
  rowStart = NULL,
  rowEnd = NULL
)

Arguments

scenarios	Scenario data frame
cmd	Command to run openMalaria.
dryRun	If TRUE, only the final command is printed but not executed.
verbose	If TRUE, use OpenMalaria's verbose output.
ncores	Number of parallel processes to use.
rowStart	Starting row. Optional.
rowEnd	End row. Optional.

SwissTPH/r-openMalariaUtilities documentation built on Sept. 14, 2024, 1:34 a.m.