write_end_compat: Write the underlying transmission dynamics

In SwissTPH/r-openMalariaUtilities: Helper functions to provide easier usage of Open Malaria from R

Write the underlying transmission dynamics

Description

Write the underlying transmission dynamics

Usage

write_end_compat(
  baseList,
  seed = 4,
  modelname = "base",
  selectedOptions = NULL,
  comorb = 0.0968,
  critage = 0.117383,
  logodds = 0.736202,
  healthSystemMemory = "6t",
  ...
)

Arguments

baseList	List with experiment data.
seed	Number of replicates per scenario.
modelname	Select model (default= base 'R0000'). Other options currently not available.
selectedOptions	Model options to activate. Can be any combination of c("COMORB_HET", "VECTOR_SIMPLE_MPD_MODEL", "LOGNORMAL_MASS_ACTION", "MAX_DENS_CORRECTION", "INNATE_MAX_DENS", "INDIRECT_MORTALITY_FIX").
comorb	Comorbidity.
critage	Critical age.
logodds	Log odds terms.
healthSystemMemory	healthSystemMemory (see OpenMalaria).
...	deprecated

SwissTPH/r-openMalariaUtilities documentation built on Sept. 14, 2024, 1:34 a.m.