write_monitoring_compat: Writes the monitoring measures xml chunk

In SwissTPH/r-openMalariaUtilities: Helper functions to provide easier usage of Open Malaria from R

Writes the monitoring measures xml chunk

Description

Wrapper function for write_continuous and write_SurveyOptions

Usage

write_monitoring_compat(
  baseList,
  name = "Annual Surveys",
  continuous = TRUE,
  SurveyOptions = TRUE,
  surveyMeasures = NULL,
  continuousMeasures = NULL,
  y1 = 2000,
  y2 = 2036,
  m1 = 1,
  m2 = 1,
  d1 = 1,
  d2 = 1,
  SIMSTART = "1918-01-01",
  interval = "month",
  detect = 200,
  upperbounds = c(1, 2, 5, 6, 10, 11, 100)
)

Arguments

baseList	List with experiment data.
name	Name of monitoring settings.
continuous	Write measures for the continuous surveys
SurveyOptions	Write measures for the SurveyOptions
surveyMeasures	If NULL, default will be used
continuousMeasures	If NULL, default will be used
y1	Year of the first date (surveys starting from year y1)
y2	Year of the end date (surveys continuing until year y2)
m1	Month of the first date
m2	Month of the end date
d1	Day of the first date
d2	Day of the end date
SIMSTART	Starting date of the simulations in the format "yyyy-mm-dd", default e.g. "1918-01-01"
interval	Interval "month" "year" "quarter"
detect	Detection limit for parasites in the blood
upperbounds	Defines the upper age bound per age group

SwissTPH/r-openMalariaUtilities documentation built on Sept. 14, 2024, 1:34 a.m.