grapes-w-slash-o-grapes | x without y |
mt_batch | Correct for batch-effects in 'mmt' objects based on... |
mt_diffexprs | Calculate differential expression statistics by a grouping... |
mt_dumpDE | Extract results from DE analysis done using 'mt_diffexprs'. |
mt_enrichCOG | Perform enrichment analysis using COG categories. |
mt_enrichKO | Perform enrichment analysis using KEGG annotation. |
mt_gather | Gather the mmt object into one dataframe, suitable for e.g.... |
mt_GenomeFrequencyMatrix | Computes a by-genome frequency matrix of any attribute in the... |
mt_load | Load the transcriptomics data, associated gene data and... |
mt_loadMetaT | Load data produced by the MetaT pipeline into R. |
mt_phi | Calculates the phi-statistic of all genes in 'mmt' object. |
mt_plotpairs | Plot multiple combinations of sample gene expressions in a... |
mt_stackbar | Make a stacked barplot of the sequencing statistics. |
mt_subset | Normalise and subset the data in 'mmt' objects based on... |
print.mmt | Prints mmt object summary (internal function) |
setroworder | The row-version of setcolorder in data.table (internal... |
test_pathway | performs a hypergeometric test on a set of genes (internal... |
vis_boxplot | Visually appealing boxplots |
vis_ordinate | Visually appealing ordination plots |
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