Description Usage Arguments Details Value Author(s) Examples
mt_stackbar
1 | mt_stackbar(mmt,Raw,after_QC)
|
mmt |
(required) An object of class |
group_by |
(optional) A column name in the metadata to group samples by. (Default: |
round_to |
(optional) Round the counts to thousands ("K") or milions ("M"). (Default: |
size_axis |
(optional) Specify size of primary and secondary axis. (Default: |
size_text |
(optional) Specify size of text in plot. (Default: |
detailed |
(optional) Output a table with the data used for the plot. |
The mt_stackbar
function only works on data generated
from the MetaT pipeline and loaded
using the mt_loadMetaT
function. It is meant for data quality assesment
by giving a quick overview of the proportions of data removed for each pre-processing
step, if this is available in the metadata.
A ggplot
Thomas Yssing Michaelsen tym@bio.aau.dk
1 2 3 4 5 6 | ## Not run:
data("example_mmt")
mt_stackbar(example_mmt,Raw = "Raw",after_QC = "after_QC",after_filter = "after_filter")
## End(Not run)
|
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